I wrote a blog post for packtpub describing the K-means clustering procedure. The codes I provided were written in R, I also pointed to another blog post of mine where I use python to explain this algotithm. I decided to write a D3 visualization of the clusters.
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<meta charset="utf-8">
<style>
body {
font: 10px sans-serif;
}
.axis path,
.axis line {
fill: none;
stroke: #000;
shape-rendering: crispEdges;
}
.dot {
stroke: none;
}
.tooltip{
position: absolute;
width: 130px;
height: 50px;
padding: 2px;
font: 12px sans-serif;
background: lightgreen;
border: 2px;
border-radius: 5px;
/* border-left: 1px;
border-right: 1px;*/
pointer-events: none;
}
</style>
<body>
<script src="https://d3js.org/d3.v3.min.js"></script>
<script>
var margin = {top: 20, right: 20, bottom: 30, left: 40},
width = 960 - margin.left - margin.right,
height = 500 - margin.top - margin.bottom;
var x = d3.scale.linear()
.range([0, width]);
var y = d3.scale.linear()
.range([height, 0]);
var color = d3.scale.category20();
var xAxis = d3.svg.axis()
.scale(x)
.orient("bottom");
var yAxis = d3.svg.axis()
.scale(y)
.orient("left");
var svg = d3.select("body").append("svg")
.attr("width", width + margin.left + margin.right)
.attr("height", height + margin.top + margin.bottom)
.append("g")
.attr("transform", "translate(" + margin.left + "," + margin.top + ")");
var tooltip = d3.select("body").append("div")
.attr("class", "tooltip")
.style("opacity", 0);
d3.csv("clusters.csv", function(error, data) {
if (error) throw error;
data.forEach(function(d) {
d.Alcohol = +d.Alcohol;
d.Malic = +d.Malic;
d.cluster = d.cluster;
});
x.domain(d3.extent(data, function(d) { return d.Alcohol; })).nice();
y.domain(d3.extent(data, function(d) { return d.Malic; })).nice();
svg.append("g")
.attr("class", "x axis")
.attr("transform", "translate(0," + height + ")")
.call(xAxis)
.append("text")
.attr("class", "label")
.attr("x", width)
.attr("y", -6)
.style("text-anchor", "end")
.text("Alcohol");
svg.append("g")
.attr("class", "y axis")
.call(yAxis)
.append("text")
.attr("class", "label")
.attr("transform", "rotate(-90)")
.attr("y", 6)
.attr("dy", ".71em")
.style("text-anchor", "end")
.text("Malic")
svg.selectAll(".dot")
.data(data)
.enter().append("circle")
.attr("class", "dot")
.attr("r", 5)
.attr("cx", function(d) { return x(d.Alcohol); })
.attr("cy", function(d) { return y(d.Malic); })
.style("fill", function(d) { return color(d.cluster); })
.on("mouseover", function(d){
tooltip.transition()
.duration(200)
.style("opacity", .9);
tooltip.html("Cluster: " + d.cluster + "<br/> Alcohol: " + d.Alcohol + "<br/> Malic: " + d.Malic)
.style("left", (d3.event.pageX + 10) + "px")
.style("top", (d3.event.pageY - 20) + "px");
})
.on("mouseout", function(d){
tooltip.transition()
.duration(500)
.style("opacity",0);
});
var legend = svg.selectAll(".legend")
.data(color.domain())
.enter().append("g")
.attr("class", "legend")
.attr("transform", function(d, i) { return "translate(0," + i * 20 + ")"; });
legend.append("rect")
.attr("x", width - 18)
.attr("width", 18)
.attr("height", 18)
.style("fill", color);
legend.append("text")
.attr("x", width - 24)
.attr("y", 9)
.attr("dy", ".35em")
.style("text-anchor", "end")
.text(function(d) { return d; });
});
</script>
Modified http://d3js.org/d3.v3.min.js to a secure url
https://d3js.org/d3.v3.min.js