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<!DOCTYPE html> <head> <meta charset="utf-8"> <script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js"></script> </head> <body> <script> // Feel free to change or delete any of the code you see! var genomelength = 7800; var tickMarks = {thousand: [], fivehundred: [], onehundred: []}; var genome_positions = []; for (var i = 1; i <= genomelength; i++) { genome_positions.push(i); } genome_positions.forEach(function(currentValue, index, myArray){ if (currentValue % 1000 === 0) { tickMarks.thousand.push(currentValue); } else if (currentValue % 500 === 0) { tickMarks.fivehundred.push(currentValue); } else if (currentValue % 100 === 0) { tickMarks.onehundred.push(currentValue); } }); var svg = d3.select("body").append("svg").attr({height: 500,width: genomelength/10}); svg.append("rect") .attr({x: 0, y: 100, width: genomelength/10, height: 30}) .style({"stroke-width": "2px", "fill": "white", "stroke": "black"}); d3.json("genes.json.txt", function(error, json) { if (error) return console.warn(error); var rects = svg.selectAll(".genes") .data(json) .enter() .append("rect"); var rectAttributes = rects .attr("x", function (d) { return d.start/10; }) .attr("y", function (d) { if(d.direction === "forward" && d.name % 2 === 1) return 100 else if (d.direction === "forward" && d.name % 2 === 0) return 70 else if (d.direction === "reverse" && d.name % 2 === 1) return 130 else if (d.direction === "reverse" && d.name % 2 === 0) return 160;}) .attr("height", function(d) { return 0;}) .attr("width", function (d) { return (d.stop-d.start)/10; }) .style({"fill": function(d) { if (d.direction === "reverse") return "red" else if (d.direction === "forward") return "green";},"stroke":"black", "stroke-width": "2px"}) .transition().delay(3000).duration(1000) .attr("y", function (d) { if (d.direction ==="forward") return 70 else if (d.direction === "reverse") return 130; }) .attr("height", function (d) {return 30;}); var text = svg.selectAll("text") .data(json) .enter() .append("text"); var textLabels = text .attr("text-anchor", "middle") .attr("x", function(d){return (d.start+((d.stop-d.start)/2))/10;}) .attr("y", function (d) { if(d.direction === "forward") return 90 else if (d.direction === "reverse") return 150; }) .text( function(d){return d.name}) .attr("font-family", "arial") .attr("font-size", "20px") .attr("fill", function(d) { if (d.direction === "reverse") return "red" else if (d.direction === "forward") return "green";}) .transition().delay(3000).duration(1000) .attr("fill", "white") }); var group = svg.selectAll(".a") .data(tickMarks.thousand) .enter() .append("g"); group.append("rect") .style({"fill": "black"}) .attr({x: 0, y: 100, width: "1px", height: 30}) .transition().duration(3000) .attr("transform", function (d) { return "translate(" + d/10 + ",0)"; }); var group2 = svg.selectAll(".b") .data(tickMarks.fivehundred) .enter() .append("g"); group2.append("rect") .style({"fill": "black"}) .attr({x: 0, y: 100, width: "1px", height: 15}) .transition().duration(2000) .attr("transform", function (d) { return "translate(" + d/10 + ",0)"; }); var group3 = svg.selectAll(".c") .data(tickMarks.onehundred) .enter() .append("g"); group3.append("rect") .style({"fill": "black"}) .attr({x: 0, y: 115, width: "1px", height: 15}) .transition().duration(1000) .attr("transform", function (d) { return "translate(" + d/10 + ",0)"; }); </script> </body>
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