I used this block of Brooklyn boroughs as a base. I grabbed shapefiles of routes and stations from the Spatiality blog, and converted to topojson and CSV, respectively.
Modified http://d3js.org/d3.v3.min.js to a secure url
Modified http://d3js.org/topojson.v0.min.js to a secure url
https://d3js.org/d3.v3.min.js
https://d3js.org/topojson.v0.min.js