I think that tooltipsy dosen't work with the map because it only recognizes the svg area, not the countries' path. That could be an explanation to why the tooltip appears in the top of the svg.
Modified http://labratrevenge.com/d3-tip/javascripts/d3.tip.v0.6.3.js to a secure url
https://d3js.org/d3.v3.min.js
https://d3js.org/queue.v1.min.js
https://cdnjs.cloudflare.com/ajax/libs/jquery/3.0.0-alpha1/jquery.min.js
https://labratrevenge.com/d3-tip/javascripts/d3.tip.v0.6.3.js
https://d3js.org/topojson.v1.min.js