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<head>
<meta charset="utf-8">
<script src="https://d3js.org/d3.v4.min.js"></script>
<script src="https://d3js.org/d3-collection.v1.min.js"></script>
<script src="https://d3js.org/d3-dispatch.v1.min.js"></script>
<script src="https://d3js.org/d3-quadtree.v1.min.js"></script>
<script src="https://d3js.org/d3-timer.v1.min.js"></script>
<script src="https://d3js.org/d3-force.v1.min.js"></script>
<style>
body { margin:0;position:fixed;top:0;right:0;bottom:0;left:0; }
</style>
</head>
<body>
<button><p id="normal">Unsort</p></button>
<button><p id="resistance">Antibiotic Resistance</p></button>
<script>
//https://bl.ocks.org/oikonang/c645e2aa3a4fe313269afc1c39c8a05d
// function sortSwitchConstructor(dataType){
// .this.currentDataType = dataType;
// }
var svg = d3.select("body").append("svg")
.attr("width", 1280)
.attr("height", 720)
.attr("id", "chart");
var bubbleChart = function (){
var width = 1280
height = 720;
function chart (selection){
tooltip = d3.select("body")
.append("div")
.style("position", "absolute")
.style("visibility", "visible")
.style("color", "white")
.style("padding", "8px")
.style("background-color", "#626D71")
.style("border-radius", "6px")
.style("text-align", "center")
.style("font-family", "monospace")
.style("width", "100px")
.text("");
}
chart.width = function (value) {
if (!arguments.length) {return width;}
width = value;
return chart;
}
chart.height = function (value){
if (!arguments.length){return height;}
height = value
return chart;
}
return chart;
}
d3.csv("BIO583_Salmonella_data.csv", function (error, data) {
if (error) {
console.error("Error getting or parsing the data");
throw error;
}
//var data = BIO583_Salmonella_data
var chart = bubbleChart().width(1280).height(720);
d3.select("#normal").data(data).call(chart).on("click",function() {
/*var div = d3.select("body")
.selectAll("div")
.data(data)
.enter().append("div");*/
function ticked (e) {
node.attr("cx", function (d) { return d.x; })
.attr("cy", function (d) { return d.y; })
}
//d3 forceSimulation help https://github.com/d3/d3-force
//also https://d3indepth.com/force-layout/
var simulation = d3.forceSimulation(data)
.force("charge", d3.forceManyBody().strength([-40]))
.force("x", d3.forceX())
.force("y", d3.forceY())
.on("tick", ticked);
var scaleRadius = d3.scaleLinear()
.domain([d3.min(data, function (d) {return +d.gene_number}),
d3.max(data, function (d) {return +d.gene_number})])
.range([10,22])
var colorCircles = d3.scaleOrdinal(d3.schemeCategory20);
var node = svg.selectAll("circle")
.data(data)
.enter()
.append("circle")
.attr("r", function (d) {return scaleRadius(d.gene_number)})
.style("fill", function (d) {return colorCircles(d.Serotype)})
.attr("transform", "translate(" + [800 / 2, 480 / 2] + ")")
.on("mouseover", function(d) {
tooltip.html(d.Isolate +"<br>"+ d.Serotype+"<br>"+d.gene_number);
return tooltip.style("visibility", "visible");
})
.on("mousemove", function () {
return tooltip.style("top", (d3.event.pageY-10)+"px").style("left", (d3.event.pageX+10)+"px");
})
.on("mouseout", function () {return tooltip.style("visibility", "hidden");});
})
d3.select("#resistance").data(data).call(chart).on("click",function() {
/*var div = d3.select("body")
.selectAll("div")
.data(data)
.enter().append("div");*/
function ticked (e) {
node.attr("cx", function (d) { return d.x; })
.attr("cy", function (d) { return d.y; })
}
//d3 forceSimulation help https://github.com/d3/d3-force
//also https://d3indepth.com/force-layout/
var simulation = d3.forceSimulation(data)
.force("charge", d3.forceManyBody().strength([-40]))
.force("x", d3.forceX().x(function(d) { return [d.gene_number * 40]}))
.force("y", d3.forceY())
.on("tick", ticked);
var scaleRadius = d3.scaleLinear()
.domain([d3.min(data, function (d) {return +d.gene_number}),
d3.max(data, function (d) {return +d.gene_number})])
.range([10,22])
var colorCircles = d3.scaleOrdinal(d3.schemeCategory20);
var node = svg.selectAll("circle")
.data(data)
.enter()
.append("circle")
.attr("r", function (d) {return scaleRadius(d.gene_number)})
.style("fill", function (d) {return colorCircles(d.Serotype)})
.attr("transform", "translate(" + [800 / 2, 480 / 2] + ")")
.on("mouseover", function(d) {
tooltip.html(d.Isolate +"<br>"+ d.Serotype+"<br>"+d.gene_number);
return tooltip.style("visibility", "visible");
})
.on("mousemove", function () {
return tooltip.style("top", (d3.event.pageY-10)+"px").style("left", (d3.event.pageX+10)+"px");
})
.on("mouseout", function () {return tooltip.style("visibility", "hidden");});
})
});
//AGAIN, LINKS ARE DOWN HERE:
//d3 forceSimulation help https://github.com/d3/d3-force
//also https://d3indepth.com/force-layout/
</script>
</body>
https://d3js.org/d3.v4.min.js
https://d3js.org/d3-collection.v1.min.js
https://d3js.org/d3-dispatch.v1.min.js
https://d3js.org/d3-quadtree.v1.min.js
https://d3js.org/d3-timer.v1.min.js
https://d3js.org/d3-force.v1.min.js