node viz

Built with blockbuilder.org

<!DOCTYPE html>
<meta charset="utf-8">
<style>

.node circle {
  cursor: pointer;
  stroke: #3182bd;
  stroke-width: 1.5px;
}

.node text {
  font: 10px sans-serif;
  pointer-events: none;
  text-anchor: middle;
}

line.link {
  fill: none;
  stroke: #9ecae1;
  stroke-width: 1.5px;
}

</style>
<body>
<script src="//d3js.org/d3.v3.min.js"></script>
<script>

var width = 1500,
    height = 1000,
    root;

var force = d3.layout.force()
    .linkDistance(250)
    .charge(-120)
    .gravity(.005)
    .size([width, height])
    .on("tick", tick);

var svg = d3.select("body").append("svg")
    .attr("width", width)
    .attr("height", height);

var link = svg.selectAll(".link"),
    node = svg.selectAll(".node");

d3.json("genome.json", function(error, json) {
  if (error) throw error;

root = json;
  update();
});

function update() {
  var nodes = flatten(root),
      links = d3.layout.tree().links(nodes);
  // Restart the force layout.
  force
      .nodes(nodes)
      .links(links)
      .start();

// Update links.
  link = link.data(links, function(d) { return d.target.id; });

link.exit().remove();

link.enter().insert("line", ".node")
      .attr("class", "link");

// Update nodes.
  node = node.data(nodes, function(d) { return d.id; });

node.exit().remove();

var nodeEnter = node.enter().append("g")
      .attr("class", "node")
      .on("click", click)
      .call(force.drag);

nodeEnter.append("circle")
      .attr("r", function(d) { return Math.sqrt(d.size) / 10 || 4.5; });

nodeEnter.append("text")
      .attr("dy", ".35em")
      .text(function(d) { return d.name; });

node.select("circle")
      .style("fill", color);
}

node.attr("transform", function(d) { return "translate(" + d.x + "," + d.y + ")"; });
}

function color(d) {
  return d._children ? "#3182bd" // collapsed package
      : d.children ? "#c6dbef" // expanded package
      : "#fd8d3c"; // leaf node
}

// Toggle children on click.
function click(d) {
  if (d3.event.defaultPrevented) return; // ignore drag
  if (d.children) {
      collapseAll(d);
  } else {
      if (d._parent){
          d._parent.children.forEach(function(e){
              if (e != d){
                  collapseAll(e);
              }
          });
      }
    d.children = d._children;
    d._children = null;
  }
  update();
}

// Returns a list of all nodes under the root.
function flatten(root) {
  var nodes = [], i = 0;

function recurse(node) {
    if (node.children) node.children.forEach(recurse);
    if (!node.id) node.id = ++i;
    nodes.push(node);
  }
  recurse(root);
  return nodes;
}

</script>

https://d3js.org/d3.v3.min.js