Genome Viewer using GBK

forked from nguyenbq's block: Genome Viewer using GBK

<!DOCTYPE html>

<head>
  <meta charset="utf-8">
  <script type="text/javascript" src="https://cdn.jsdelivr.net/npm/d3@2.10.3/d3.v2.js"></script>
  <script src="https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js"></script>
  <script src="//d3js.org/d3.v3.min.js" language="JavaScript"></script>
  <script src="https://labratrevenge.com/d3-tip/javascripts/d3.tip.v0.6.3.js"></script>
  <style>
    body { 
        margin: ;
        position:fixed;
        top:0;
        right:0;
        bottom:0;
        left:2;
        background-image: linear-gradient(to bottom, #EFEFBB, #D4D3DD 100%); 
    }
  </style>
</head>

<body>

//The gene boxes attributes
		 position.append("rect")
       	.attr("x", function (d) {
       		 return (0 - ((d.end-d.start)/10)) - 2
    	 	})
    	  .attr("y", function (d) { 
       		 if (((d.end-d.start)/10)%2==0) { 
               return 100;
           } else {
             	return 160;
           }
     })
      	.attr("height", function(d) { return 0; })
      	.attr("width", function (d) { return (d.end-d.start)/10; })
       	.style("fill", function(d) {
          if (d.start%3==0) { 
            return "009900"; 
          } else {
            	return "009900";
          	}
        })
      	.style("stroke","black")
     		.style({"stroke-width":"2px"})
   			.transition().delay(2000).duration(2000)
     		.attr("x", function (d) { 
          return d.start/10; 
        })
     	  .attr("y", function (d) { 
       		 if (d.start%3==0) { 
               return 140;
           } else {
             	return 60;
           }
     })
       	.attr("height", function (d) {return 30;})
      	group.on("click", function() {
        	console.log("rect");
      	})
  		//text in gene boxes
      genes.append("text") 
        .attr("x", function (d) { console.log(d);return ((d.location[0].start+d.location[0].end)/10)/2})
        .style("text-anchor","middle")
        .style({"font-family":"verdana","font-size":"18px","fill":"black"})
        .attr("y", 80)
        .text(function (d) {
        	return d.gene;})
          //var c = 0;
          //var g = 0;
          //for (var i=0; i<=d.sequence.length; i++) {
           // if (d.sequence[i] === "C") {c++; }
           // else if (d.sequence[i] === "G") {g++;}
          //}
         // return (((c+g)/d.sequence.length)*100;})
        //.attr("fill-opacity",0)
        //.transition().duration(3000).delay(2000)
        //.attr("fill-opacity",1);

// text above or below boxes
      position.append("text") 
        .attr("x", function(d) { return ((d.end - d.start)/2)/10;})
        .attr("y", 50)
        .style({"text-anchor":"middle","fill":"black","font-weight":"bold"})
        .attr("font-family","sans-serif")
        .text(function(d) {return d.start;})
        .attr("fill-opacity", 0)
        .transition().delay(4500).duration(1000)
        .attr("fill-opacity", 1);

});
  </script>
  <button onclick="SNPs()" class="button">Show SNPs</button>
</body>

Modified http://mbostock.github.com/d3/d3.js to a secure url

Modified http://labratrevenge.com/d3-tip/javascripts/d3.tip.v0.6.3.js to a secure url

https://mbostock.github.com/d3/d3.js

https://cdnjs.cloudflare.com/ajax/libs/d3/3.5.5/d3.min.js

https://d3js.org/d3.v3.min.js

https://labratrevenge.com/d3-tip/javascripts/d3.tip.v0.6.3.js