// Generated by CoffeeScript 1.4.0
(function() {
  var __hasProp = {}.hasOwnProperty,
    __extends = function(child, parent) { for (var key in parent) { if (__hasProp.call(parent, key)) child[key] = parent[key]; } function ctor() { this.constructor = child; } ctor.prototype = parent.prototype; child.prototype = new ctor(); child.__super__ = parent.prototype; return child; };

  window.LongitudinalModel = (function(_super) {
    var defaults;

    __extends(LongitudinalModel, _super);

    function LongitudinalModel() {
      return LongitudinalModel.__super__.constructor.apply(this, arguments);
    }

    defaults = {
      currentRowId: null,
      clickedRowId: null,
      currentCluster: null,
      currentTag: null
    };

    LongitudinalModel.prototype.initialize = function(parsedData, userOptions) {
      var id;
      if (userOptions == null) {
        userOptions = {};
      }
      this.options = {
        rowNameColumn: userOptions.rowNameColumn || "id",
        yAxisName: userOptions.yAxisName || "log-ratio",
        specialColumnNames: userOptions.specialColumnNames || ["cluster"],
        rowType: userOptions.rowType,
        tagFile: userOptions.urlVars["tags"],
        showGroups: userOptions.urlVars["groups"],
        hideHeatmap: userOptions.urlVars["no_heatmap"],
        hidePCP: userOptions.urlVars["no_pcp"],
        hideRowNames: userOptions.urlVars["no_row_names"]
      };
      this.options.specialColumnNames = _.union(this.options.specialColumnNames, this.options.rowNameColumn);
      this.parsedData = parsedData;
      this.rowNames = _.pluck(this.parsedData, this.options.rowNameColumn);
      this.rowIds = (function() {
        var _i, _ref, _results;
        _results = [];
        for (id = _i = 1, _ref = this.parsedData.length; 1 <= _ref ? _i <= _ref : _i >= _ref; id = 1 <= _ref ? ++_i : --_i) {
          _results.push("_row_" + id);
        }
        return _results;
      }).call(this);
      this.columnNames = this.getColumnNames();
      this.columnGroups = this.getColumnGroups();
      this.longitudinalData = this.getLongitudinalData();
      this.groupedLongitudinalData = this.getGroupedLongitudinalData();
      this.clusters = _.pluck(this.parsedData, "cluster");
      this.options.showClusters = _.uniq(this.clusters).length > 1;
      return this.clusterNames = this.getClusterNames();
    };

    LongitudinalModel.prototype.getRowName = function(rowName) {
      return this.rowNames[this.rowIds.indexOf(rowName)];
    };

    LongitudinalModel.prototype.getColumnGroups = function() {
      return _.chain(this.columnNames).map(function(columnName) {
        return columnName.split("_")[0];
      }).uniq().value();
    };

    LongitudinalModel.prototype.getLongitudinalValueExtent = function() {
      var longitudinalValues;
      longitudinalValues = _.flatten(this.longitudinalData.map(function(longitudinalDataRow) {
        return longitudinalDataRow.map(function(item) {
          return item.value;
        });
      }));
      return d3.extent(longitudinalValues);
    };

    LongitudinalModel.prototype.getColumnNames = function() {
      var _this = this;
      return _.keys(this.parsedData[0]).filter(function(columnName) {
        return !_.include(_this.options.specialColumnNames, columnName);
      });
    };

    LongitudinalModel.prototype.getLongitudinalData = function() {
      var _this = this;
      return this.parsedData.map(function(row) {
        return _this.columnNames.map(function(columnName) {
          return {
            condition: columnName,
            value: +row[columnName]
          };
        });
      });
    };

    LongitudinalModel.prototype.getGroupedLongitudinalData = function() {
      var _this = this;
      return this.parsedData.map(function(row) {
        var columnGroups, currentGroup, longitudinalValues;
        columnGroups = _this.columnGroups.slice(0);
        currentGroup = columnGroups.shift();
        longitudinalValues = [];
        _this.columnNames.map(function(columnName) {
          if (!columnName.match(RegExp("^" + currentGroup + "_"))) {
            longitudinalValues.push({
              condition: "",
              value: null
            });
            currentGroup = columnGroups.shift();
          }
          return longitudinalValues.push({
            condition: columnName,
            value: +row[columnName]
          });
        });
        return longitudinalValues;
      });
    };

    LongitudinalModel.prototype.getClusterNames = function() {
      var clusterFrequencies;
      clusterFrequencies = window.getFrequencies(this.clusters);
      return _.chain(clusterFrequencies).keys().sortBy(function(x) {
        return clusterFrequencies[x];
      }).value().reverse();
    };

    return LongitudinalModel;

  })(Backbone.Model);

}).call(this);